I take that back it may be a bit more comples.  Now i believe it's due to the timing of file updates to get the block date and bit torrent sync.  i think it is deleting and re-adding items to quick on the altcoin causing bit torrent sync to hiccup.  I think putting a delay or timer on this process may help us out a bit.  i will research it.  Stay tuned for #Apertus 0.3.2